#Install libcurl for r on mac os x install
#Install libcurl for r on mac os x full

You can now put muscle and dssp in any of the locations listed by echo $PATH, including /my/new/path/, which of course you should change to something sensible for you.įor Windows, right click “My computer” -> click “Change settings” -> Advanced -> Environment Variables -> From “System variables” list find “Path” and click “Edit” -> Add the path to your programs at the end of the line. Conos is an R package to wire together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. This file should contain a line like the following: export PATH='/my/new/path:$PATH' bash_profile file in your home directory.

You can add extra locations to your path by creating or editing an existing. So this is stating that you can run Unix style applications located in 5 default locations of path in the file system: /usr/bin To test this you should be able to call these programs from the command line with just their name from any directory.įor Mac and Linux you can find out whats in your PATH by launching your favorate Terminal program (on Mac one called Terminal can be found in Applications/Utilities folder) and entering: echo $PATHĪnd the result should be like this… /usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin Ideally, as mentioned previouly, MUSCLE and DSSP should installed on your system and be in the search path for executables.

ncdf is only required for reading/writing netcdf binary trajectory files igraph for visualization of correlation network analysis RCurl and XML for searching and fetching data from various biomolecular databases.Ī Note on Calling External Programs from R/Bio3D Note: If you encounter difficulties in installing any of the suggested packages, note that most functions in Bio3D will work just fine without.

#Install libcurl for r on mac os x full

In addition, for full Bio3D functionality you should have MUSCLE and DSSP installed on your system and in the search path for executables.

#Install libcurl for r on mac os x install

What happened Nvm install is not working nvm install node is not working nvm install 8 is not working Nvm ls-remote returns n/a. What steps did you perform Installed nvm Added nvm to path as specified.

i.e. the R package ncdf requires netcdf and libnetcdf-dev XML requires libxml2-dev and RCurl requires libcurl3-dev. install script in readme, Homebrew): Install script in readme with 0.33.11. Make sure required headers and libraries are installed on your system prior to installing these R packages. īio3D makes use of a number of additional R packages including ncdf, bigmemory, XML, RCurl and igraph. Detailed instructions for obtaining and installing R on various platforms can be found on the R home page. In order for R to compile the package on Linux and Mac, msgpack-c ( ) and development files for libcurl ( ) are required.Before you attempt to install Bio3D you should have a relatively recent version of R installed and working on your system (we recommend at least R version 3.1.0). In order to compile the package in Linux and Mac, the msgpack-c library ( ) and the development files for libcurl ( ) are required. Swire4R requires Swire and SWire requires Stata >= 13. The status component is an integer number, which is zero in the case of no error in executing the request the data component is a vector containing the data from the 'price' variable. The swire.getNumericVar returns a list with two components. library (SWire4R ) > swire.getNumericVar ( 'price' ) $status